It does not clarify. You need to show your WBPP configuration that produced the masterLight you sent me. Use the Diagnostics button to generate and show all WBPP panels. This is a configuration issue.
Also. You need to do something. You need to create your masterdark again manually.
Then you need to use WBPP and create the masterdark only. Just look the dark frames you used manually into WBPP. Do nothing else. Then run WBPP and create this masterdark. They will be the same. They have to be the same. If they are different there is a problem.
Make certain you can reproduce the difference you see.
Look at the % of rejection. I am guessing that LFC is doing more aggressive rejection. Then when you display with AutoSTF you will have a difference appearance because LFC is rejecting more at the low end.
I predict that if you adjust the rejection strength of WSC you will achieve similar (near identical) result of LFC. The default WSC values are not too aggressive.
In part, I want to make clear ... the reason the images look so different is more to do with the display than anything else. You are getting different amounts of rejection..and this affects the display. But you can likely do a statistical analysis of the values and find the images are similar..and display them in similar ways using the STF.
I manually stacked with WSC and LFC and, yes, the rejection of LFC is more aggressive.
But I'm not enoughcomfortable with the parameters of pixel rejection to have the same result with the two algorithms.
So, if I understand correctly, the conclusion is, except for the rejection of WSC which is less aggressive than FSC (with the default parameters), the two Masterdarks are identical and the visual difference is only the consequence of a different stretching.
Well..they are not identical...since one has greater rejection than the other. But given the same settings..you will get the same results. The greater rejection of one made the image look different than the other (because you have different histograms) when displaying with AutoSTF.
Yes, I think we have a conclusion.
I am perhaps surprised the darks are so noisy that the rejection method mattered that much.
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